| Protein ZmLBD20 | |
|---|---|
|
ZmLBD20 is a protein in the LBD family.
|
|
| Information | |
| TF Name: | ZmLBD20 |
| Species: | Maize |
| TF Family: | LBD |
| Gene Name(Synonym): | LBD20 |
| Uniprot ID: | C0PK80 |
| Subgenome: | 1 |
Protein ZmLBD20
ZmLBD20 is a protein in the LBD family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF03195 | |
| Zm00001eb149360_T001 |  |
| Zm00001eb149360_T002 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d043036 | DAPseq |  |
sequence | fimo | position |
| Zm00001d043036 | DAPseq |  |
sequence | fimo | position |
| Zm00001d043036 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d043036 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmLBD20 is the regulator
Interactions where ZmLBD20 is the target
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Zm00001eb149360_T001 from maize genome v5
Amino Acid Sequence
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MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSRYWPPHIFYL
LCLKCLYFVSI
MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSRYWPPHIFYL
LCLKCLYFVSI
MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSRYWPPHIFYL
LCLKCLYFVSI
MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSRYWPPHIFYL
LCLKCLYFVSI
MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSRYWPPHIFYL
LCLKCLYFVSI
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF03195 |
|
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Nucleotide Sequence
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TGCCTTTTAAGCACTCTTTCGTCCC...
TGCCTTTTAAGCACTCTTTCGTCCCCAACTTTACACCTCTACATGTCTCATATCTCTCTGTCTGTCCAACGATCCCTCTCCTTTGTCATCTCCGTCTCCATCTCCCAAGCACCGGAGAGGAGAGCTAGCATGCCTGGATGTCCACGGAGAGGGAGAGACTCGATGAGATCGGGAAGATCAAGCGAGAGCCGGATACAGCCGCCCTCGCTGTCGCTGCCGCATCCGCCTCCACCGTGCCGGCCGACAACCACATCCCACGCCGCCTCGGCCACGGCGGTGCCCTCAACACCTTGACGCCGTGCGCCGCGTGCAAGCTCCTCCGCCGCCGCTGCGCGCAGGAATGCCCCTTCGCCCCTTACTTCTCGCCGCATGAGCCCCACAAATTCGCCGCCGTCCACAAGGTCTTCGGCGCTAGCAACGTCTCCAAGATGCTCTTGGAGGTGGTGGAGGGGGAGAGGGCGGACACAGCGAGCAGCCTGGTGTACGAAGCGAACCTCCGGTTGCGGGATCCGGTGTACGGATGCATGGGCGCCATCTCCATTCTCCAGCAACAGGTGAACGCGCTGGAGGCCGAGCTGGAGGCAGTGAGGGCCGAGATCCTCAAGCACAGGTACCGGCAGGCCACCGGCAACCGTCTCATGGACGACGTGCGTGCCACGGCCAGCTTCGTCTTGGCTCCTGCGTCCGCTCCGATGCACGTTAATGACGTTGTATCAGTGGTGGAGGCAGGCCAAGAGGTCACCGCCACCGGCGGCGCGTCGGGGGTGTACATTGCGGAAGCCGAGCAGCCGTCAAGTACTAATAACTATAGCTCCCTTAACCCAAGTCGGTATTGGCCGCCACACATATTCTATCTTTTGTGTTTGAAGTGTCTATATTTTGTATCTATATAG
GRMZM2G092517_T01 from maize genome v3
Amino Acid Sequence
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MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSEHPAYFG
Nucleotide Sequence
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CTGCTACCAATTTGTCGGTCTTCAG...
CTGCTACCAATTTGTCGGTCTTCAGGCCCATCTCCCTCATTAATGTCTTGCCTTTTAAGCACTCTTTCGTCCCCAACTTTACACCTCTACATGTCTCATATCTCTCTGTCTGTCCAACGATCCCTCTCCTTTGTCATCTCCGTCTCCATCTCCCAAGCACCGGAGAGGAGAGCTAGCATGCCTGGATGTCCACGGAGAGGGAGAGACTCGATGAGATCGGGAAGATCAAGCGAGAGCCGGATACAGCCGCCCTCGCTGTCGCTGCCGCATCCGCCTCCACCGTGCCGGCCGACAACCACATCCCACGCCGCCTCGGCCACGGCGGTGCCCTCAACACCTTGACGCCGTGCGCCGCGTGCAAGCTCCTCCGCCGCCGCTGCGCGCAGGAATGCCCCTTCGCCCCTTACTTCTCGCCGCATGAGCCCCACAAATTCGCCGCCGTCCACAAGGTCTTCGGCGCTAGCAACGTCTCCAAGATGCTCTTGGAGGTGGTGGAGGGGGAGAGGGCGGACACAGCGAGCAGCCTGGTGTACGAAGCGAACCTCCGGTTGCGGGATCCGGTGTACGGATGCATGGGCGCCATCTCCATTCTCCAGCAACAGGTGAACGCGCTGGAGGCCGAGCTGGAGGCAGTGAGGGCCGAGATCCTCAAGCACAGGTACCGGCAGGCCACCGGCAACCGTCTCATGGACGACGTGCGTGCCACGGCCAGCTTCGTCTTGGCTCCTGCGTCCGCTCCGATGCACGTTAATGACGTTGTATCAGTGGTGGAGGCAGGCCAAGAGGTCACCGCCACCGGCGGCGCGTCGGGGGTGTACATTGCGGAAGCCGAGCAGCCGTCAAGTACTAATAACTATAGCTCCCTTAACCCAAGTGAGCATCCTGCATACTTTGGTTGACAATAAGCATGGATTTATTTAACATTTTGGTGGGATCACAGTAGTAGAAAGTTTGGATGAATAAACTGTGTGCAAGTTTAATTATATATACAAGTTTTCTAGAAATAGGTTATAGATGTGGATATGTATATTGGGTGACTAAAAAGTTCATCCAATATTATGGAATATATGTACCATTATTTTCTTGTAATAGCCCATTGCGTGTTGTTGATTAGTTATTAGTTTGACCAAGTAAGCGCGTCTTTATCCTATATATAAATAGTGCAACCATCAGTAGGCCGGGGTTTGTCACTCAGAATTTTAAGCAAATTCCACAGTTGCTAACACCAAACGCGTGTGCATCTCAAACACGCTGCTTCGGTGGATTAGTTCATGCATAGGCAATGATATTCCTTAATTTGCTTTCAATTTACAATAGATTTTATGGATTTATTTATCTTTGTCCAGGAGAATTTCCATCGAGGTTGATATTCCATCTTTCCTAAAAACAATAAAGAACTTGCTTCGAAGGAGTTGAAGAATTTCAAATTTAACCAAATATTATGCAAACAAGATACCTATATTTTTATATGTAATAATATATCACCAGGTGACTTACAAAATCTATTTTTTATAACGAACTTATTTAAAGGTACAAATGTTCATATTATTTTGTATAAATCTAGTCAAAAATATTTTGATATTGTTTGACTCCTTAGGAAGTAAGATTTTCATTCTTTGTTGGGACGGAAGTAAATGATAAATGGGCATGCATGTTTTGTAGTCAAAACTATTTTTTTCAGCACTTAGTTTTCAGGCCGTACTATCTATGAAGACCGTTCTTCTATG
Zm00001d043036_T001 from maize genome v4
Amino Acid Sequence
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MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSEHPAYFG
Nucleotide Sequence
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TGCCTTTTAAGCACTCTTTCGTCCC...
TGCCTTTTAAGCACTCTTTCGTCCCCAACTTTACACCTCTACATGTCTCATATCTCTCTGTCTGTCCAACGATCCCTCTCCTTTGTCATCTCCGTCTCCATCTCCCAAGCACCGGAGAGGAGAGCTAGCATGCCTGGATGTCCACGGAGAGGGAGAGACTCGATGAGATCGGGAAGATCAAGCGAGAGCCGGATACAGCCGCCCTCGCTGTCGCTGCCGCATCCGCCTCCACCGTGCCGGCCGACAACCACATCCCACGCCGCCTCGGCCACGGCGGTGCCCTCAACACCTTGACGCCGTGCGCCGCGTGCAAGCTCCTCCGCCGCCGCTGCGCGCAGGAATGCCCCTTCGCCCCTTACTTCTCGCCGCATGAGCCCCACAAATTCGCCGCCGTCCACAAGGTCTTCGGCGCTAGCAACGTCTCCAAGATGCTCTTGGAGGTGGTGGAGGGGGAGAGGGCGGACACAGCGAGCAGCCTGGTGTACGAAGCGAACCTCCGGTTGCGGGATCCGGTGTACGGATGCATGGGCGCCATCTCCATTCTCCAGCAACAGGTGAACGCGCTGGAGGCCGAGCTGGAGGCAGTGAGGGCCGAGATCCTCAAGCACAGGTACCGGCAGGCCACCGGCAACCGTCTCATGGACGACGTGCGTGCCACGGCCAGCTTCGTCTTGGCTCCTGCGTCCGCTCCGATGCACGTTAATGACGTTGTATCAGTGGTGGAGGCAGGCCAAGAGGTCACCGCCACCGGCGGCGCGTCGGGGGTGTACATTGCGGAAGCCGAGCAGCCGTCAAGTACTAATAACTATAGCTCCCTTAACCCAAGTGAGCATCCTGCATACTTTGGTTGACAATAAGCATGGATTTATTTAACATTTTGGTGGGATCACAGTAGTAGAAAGTTTGGATGAATAAACTGTGTGCAAGTTTAATTATATATACAAGTTTTCTAGAAATAGGTTATAGATGTGGATATGTATATTGGGTGACTAAAAAGTTCATCCAATATTATGGAATATATGTACCATTATTTTCTTGTAATAGCCCATTGCGTGTTGTTGATTA
Zm00001eb149360_T002 from maize genome v5
Amino Acid Sequence
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MSTERERLDEIGKIKREPDTAALAVAAASASTVPADNHIPRRLGHGGALNTLTPCAACKLLRRRCAQECPFAPYFSPHEP
HKFAAVHKVFGASNVSKMLLEVVEGERADTASSLVYEANLRLRDPVYGCMGAISILQQQVNALEAELEAVRAEILKHRYR
QATGNRLMDDVRATASFVLAPASAPMHVNDVVSVVEAGQEVTATGGASGVYIAEAEQPSSTNNYSSLNPSEHPAYFG
Nucleotide Sequence
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TGCCTTTTAAGCACTCTTTCGTCCC...
TGCCTTTTAAGCACTCTTTCGTCCCCAACTTTACACCTCTACATGTCTCATATCTCTCTGTCTGTCCAACGATCCCTCTCCTTTGTCATCTCCGTCTCCATCTCCCAAGCACCGGAGAGGAGAGCTAGCATGCCTGGATGTCCACGGAGAGGGAGAGACTCGATGAGATCGGGAAGATCAAGCGAGAGCCGGATACAGCCGCCCTCGCTGTCGCTGCCGCATCCGCCTCCACCGTGCCGGCCGACAACCACATCCCACGCCGCCTCGGCCACGGCGGTGCCCTCAACACCTTGACGCCGTGCGCCGCGTGCAAGCTCCTCCGCCGCCGCTGCGCGCAGGAATGCCCCTTCGCCCCTTACTTCTCGCCGCATGAGCCCCACAAATTCGCCGCCGTCCACAAGGTCTTCGGCGCTAGCAACGTCTCCAAGATGCTCTTGGAGGTGGTGGAGGGGGAGAGGGCGGACACAGCGAGCAGCCTGGTGTACGAAGCGAACCTCCGGTTGCGGGATCCGGTGTACGGATGCATGGGCGCCATCTCCATTCTCCAGCAACAGGTGAACGCGCTGGAGGCCGAGCTGGAGGCAGTGAGGGCCGAGATCCTCAAGCACAGGTACCGGCAGGCCACCGGCAACCGTCTCATGGACGACGTGCGTGCCACGGCCAGCTTCGTCTTGGCTCCTGCGTCCGCTCCGATGCACGTTAATGACGTTGTATCAGTGGTGGAGGCAGGCCAAGAGGTCACCGCCACCGGCGGCGCGTCGGGGGTGTACATTGCGGAAGCCGAGCAGCCGTCAAGTACTAATAACTATAGCTCCCTTAACCCAAGTGAGCATCCTGCATACTTTGGTTGACAATAAGCATGGATTTATTTAACATTTTGGTGGGATCACAGTAGTAGAAAGTTTGGATGAATAAACTGTGTGCAAGTTTAATTATATATACAAGTTTTCTAGAAATAGGTTATAGATGTGGATATGTATATTGGGTGACTAAAAAGTTCATCCAATATTATGGAATATATGTACCATTATTTTCTTGTAATAGCCCATTGCGTGTTGTTGAT
Zm00001eb149370_T001 from maize genome v5
Amino Acid Sequence
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MYTPDAPPVAVTSWPASTTDTTSLTCIGADAGAKTKLAVARTSSMRRLPVACRYLCLRISALTASSSASSAFTCCWRMEM
APMHPYTGSRNRRFASYTRLLAVSALSPSTTSCDNRHVYKSTLKSFNYRLEKHDFFFKLRLYQEHLGDVASAEDLVDGGE
FVGLMRREVRGEGAFLRAAAAEELARGARRQGVEGTAVAEAAWDVVVGRHGGGGCGSDSEGGCIRLSLDLPDLIESLPAD
GSATGRAVTT
Nucleotide Sequence
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GGGAGCTATAGTTATTAGTACTTGA...
GGGAGCTATAGTTATTAGTACTTGACGGCTGCTCGGCTTCCGCAATGTACACCCCCGACGCGCCGCCGGTGGCGGTGACCTCTTGGCCTGCCTCCACCACTGATACAACGTCATTAACGTGCATCGGAGCGGACGCAGGAGCCAAGACGAAGCTGGCCGTGGCACGCACGTCGTCCATGAGACGGTTGCCGGTGGCCTGCCGGTACCTGTGCTTGAGGATCTCGGCCCTCACTGCCTCCAGCTCGGCCTCCAGCGCGTTCACCTGTTGCTGGAGAATGGAGATGGCGCCCATGCATCCGTACACCGGATCCCGCAACCGGAGGTTCGCTTCGTACACCAGGCTGCTCGCTGTGTCCGCCCTCTCCCCCTCCACCACCTCCTGTGACAATCGACACGTTTACAAGTCTACACTGAAATCTTTTAACTATAGACTAGAAAAGCACGATTTTTTCTTCAAGTTGAGGCTTTACCAAGAGCATCTTGGAGACGTTGCTAGCGCCGAAGACCTTGTGGACGGCGGCGAATTTGTGGGGCTCATGCGGCGAGAAGTAAGGGGCGAAGGGGCATTCCTGCGCGCAGCGGCGGCGGAGGAGCTTGCACGCGGCGCACGGCGTCAAGGTGTTGAGGGCACCGCCGTGGCCGAGGCGGCGTGGGATGTGGTTGTCGGCCGGCACGGTGGAGGCGGATGCGGCAGCGACAGCGAGGGCGGCTGTATCCGGCTCTCGCTTGATCTTCCCGATCTCATCGAGTCTCTCCCTGCAGATGGAAGTGCAACAGGCAGAGCTGTCACTACTTAGGGTTTGCTGCATGTGGGATCGAAGAGGGGGAACAATCTCGAGAATTTTGATGGCAAACGAAATGATAACGAGGTTAATACATTTCAAATAAGAGTATGTGATGCCCATTTTCTGTCTCTTGATTAACTAGTTTTCAAGCAAAAGGAAATGAACAAAGAACAACGATAAGATTCCTTCTCGAAGAAAGTTTTGTTGTTGAACTGTGACAGAATTCAAGGAAGACACGTGGAGACAAATGAGGATTTCTTACCTCTCCGTGGACATCCAGGCATGCTAGCTCTCCTCTCCGGTGCTTGGGAGATGGAGACGGAGATGACAAAGGAGAGGGATCGTTGGACAGACAGAGAGATATGAGACATGTAGAGGTGTAAAGTTGGGGACGAAAGAGTGCTTAAAAGGCAAGACATTAATGAGGGAGATGGGCCTGAAGACCGACAAATTGGTAGCAGTAAGCAAATATGTATGGCGACCGGCGAAAAGATTTGTTGTTTTTATTAGTTGGCCTGGCACCCTCCCTACCCTACCTTTGATCCCTCCTGCTGTTCCTGCTCACGTGAAAGAGAGGACTGAAAAAAAGTCGGAATATATCTCGTTCTGTTCCGTTCCGATTTATATATTAAAGCGTTTAAATTCATATTTATTGG
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